CanSysPlot

Patient Level Gene Regulation Network Projection Using Multi Omic Data

Status: Upload a file to start processing.

Step 1a. Upload files for custom analysis

Return Link

VCF File *

Expression File (Optional)

Cancer Site *

Advance Parameters ▼

Number of Permutations *

CADD Cutoff Value

gnomAD Population (Optional)

Cutoff AF (Population) (Optional)

Step 1b. Load results from the TCGA dataset

Select TCGA Collection *

Select Mutation Type *

Select Sample ID *

If you use the web-based application of the CanSys tool or its command-line version available on GitHub (https://github.com/jwdelta/CanSys) in your research, please cite:

Dai, J., Posta, M., Marczyk, M. et al. Functional germline variants together with somatic mutations alter the integrity of cancer hallmark regulatory networks. Genome Med, 18, 59, (2026). https://doi.org/10.1186/s13073-026-01644-8

CanSysPlot

Patient Level Gene Regulation Network Projection Using Multi Omic Data

Step 1a. Upload files for custom analysis

Step 1b. Load results from the TCGA dataset

Step 2. Draw network

Result tables

Graph Controls